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:: Volume 11, Issue 4 (3-2019) ::
2019, 11(4): 77-96 Back to browse issues page
New-Generation Sequencing and Intrinsic Virus-Virus and Virus-Plant Interactions
Saeedeh Dehghanpour Farashah , Mehrdad Salehzadeh * , Ahmad Ashrafi
PhD. Student of Plant Pathology, Faculty of Agriculture, Shiraz University, Iran.
Abstract:   (1572 Views)
In order to understand the ecology of viruses, it is necessary to obtain comprehensive information on virus-virus and virus-host interactions in natural systems. In this study, it is found that RNA-Seq enabled this analysis without prior assumptions about infectious viruses, virus symptoms, or host genes. New generation sequencing allows identifying potential facilitators of multiple infections. Host antiviral responses occur naturally under RNA silencing. Because research into plant viruses has focused primarily on crop diseases, little is known about these viruses in the wild. RNA sequencing in plants belonging to a natural population is used to determine the simultaneous presence or absence of all viruses whose sequence has been reported, to identify new viruses, and to quantify host transcriptomes. By introducing the criteria for the number of readings and coverage of the genome, virus-induced infections and intrinsic and latent plant-virus interactions can have important applications in controlling these pathogens.
Keywords: Ecology, RNA-Seq, RNA Silencing, Transcriptome.
Full-Text [PDF 1598 kb]   (338 Downloads)    
Type of Study: Applicable | Subject: Special
Received: 2021/03/9 | Accepted: 2021/03/19 | Published: 2021/03/20
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Dehghanpour Farashah S, Salehzadeh M, Ashrafi A. New-Generation Sequencing and Intrinsic Virus-Virus and Virus-Plant Interactions. Journal of Biosafety 2019; 11 (4) :77-96
URL: http://journalofbiosafety.ir/article-1-389-en.html


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Volume 11, Issue 4 (3-2019) Back to browse issues page
فصل نامه علمی ایمنی زیستی Journal of Biosafety
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